OOR/ConferenceCall 2012 02 07

= OpenOntologyRepository: OOR Team Conference Call - Tue 2012_02_07 =

This is a regular OOR Team meeting. ... please refer to proceedings from the last team meeting at OOR/ConferenceCall_2012_01_10

Conference Call Details:

 * Date: Tuesday, 7-Feb-2012
 * Start Time: 8:30am PST / 11:30am EST / 5:30pm CET / 16:30 UTC
 * ref: World Clock
 * Expected Call Duration: 1.0~1.5 hours


 * Dial-in:
 * Phone (US): +1 (206) 402-0100  (long distance cost may apply) 
 * ... [ backup nbr: (415) 671-4335 ]
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 * when prompted enter PIN: 141184#


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 * view-only password: "ontolog"
 * if you plan to be logging into this shared-screen option (which the speaker may be navigating), and you are not familiar with the process, please try to call in 5 minutes before the start of the session so that we can work out the connection logistics. Help on this will generally not be available once the presentation starts.
 * people behind corporate firewalls may have difficulty accessing this. If that is the case, please point your browser directly to the [ slides] (where applicable) and running them locally. The speaker(s) will prompt you to advance the slides during the talk.


 * In-session chat-room url: http://webconf.soaphub.org/conf/room/oor_20120207


 * RSVP  to [mailto:peter.yim@cim3.com peter.yim@cim3.com] appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)


 * This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_02_07


 * Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.

Attendees

 * Attended:
 * KenBaclawski (chair)
 * PeterYim (scribe)
 * ToddSchneider
 * MichaelGruninger
 * BrianDavis


 * Expecting:
 * ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail  so that we can reserve enough resources to support everyone's participation. ...
 * ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail  so that we can reserve enough resources to support everyone's participation. ...


 * Regrets:
 * MikeDean
 * LeoObrst
 * TimDarr
 * MikeBennett

Agenda Ideas:
please insert any additional items below (along with your name for follow-up purposes)


 * postmortem of the last couple of workshops (Architecture-API-X & Metadata-V)
 * OOR: sandbox, devbox, socop-instance status update
 * planning and coordination on upcoming OOR events
 * doing something at OntologySummit2012
 * Member activities updates
 * action planning for "content drive" (getting people to upload ontologies)
 * Getting us to a stage when we can run a OOR-production box

Agenda & Proceedings
Archives:


 * audio recording of the session [ 1:08:20 ; mp3 ; 7.82 MB ]
 * chat-transcript of this session

1. Meeting called to order:


 * KenBaclawski takes the chair and welcome everyone
 * review and adopt agenda
 * PeterYim volunteered to take notes

2. Roll Call:


 * see above


 * welcome and intro of new member(s) (if applicable)

3. Status Review and Discussion:


 * Review and update our "Most Critical Task(s) At Hand" list ...(we will skip this stock agenda item at today's call.)
 * ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository#nid17YH

4. Key items for review and discussion today:

 * postmortem of the last couple of workshops (Metadata-V & Architecture-API-X) ... ref.
 * OOR-Metadata-V - OOR/ConferenceCall_2012_01_17
 * Michael: ORWG presentation and discussion, mainly OMV & CTS2 ... look toward more discussion at a next session
 * Brian: as of this Thu (Feb-9) ORWG is suspending and wrapping into a larger project that will look into the bigger picture of standards (cf. DISR - Defense Information Standard Repository; NCRI (UK's) work; and "Cancer InfoMatrix" - http://www.ncri-onix.org.uk/portal/#S24) ... Brian and Sherri are still going to be involved
 * OOR-Architecture-API-X - OOR/ConferenceCall_2012_01_31
 * Todd walked us through his reverse-engineered architecture of the Nov-2011 version of BioPortal
 * 3 coordinated and branched development (tab-based) effort are starting KenBaclawski+ToddSchneider (workflow & gatekeeping), MikeDean (federation) & MichaelGruninger (metadata)
 * Ken: still need some clarification from PaulAlexander on getting started on the development of a tab
 * Michael will look into java code generation from OMV


 * OOR: sandbox, devbox, socop-instance status update
 * ref. http://oor-03.cim3.net is the current OOR_SandBox
 *  is up (still on CANTOR) and accessible as: http://socop.oor.net
 * Peter: WITTGENSTEIN is not up yet, plans updated, to use this box for testing (our the next virtualization strategy based on) CentOS-KVM
 * customization: Mike & Ken has customized both oor-03 & oor-04 - ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR_SandBox_Customization#nid30R7
 * logo color still doesn't look quite right - see: http://oor-03.cim3.net (current) vs. http://oor-03.cim3.net (socop) vs. http://oor-01.cim3.net (old v2.6) vs. http://bioportal.bioontology.org/ (current BioPortal)
 * re: "Feedback" to support@oor.net - which now forwards to: peter.yim@cim3.com, yimpp1@yahoo.com, mdean@bbn.com, kenb@ccs.neu.edu, tejas@tejasparikh.com, oor-users@ontolog.cim3.net
 * PPY: glad I have not yet allowed the posting to  and its archives ... because to date, all messages received (just a few, less than 10) were all spam messages
 * see also: comment from Tejas - he has re-enabled reCaptcha on socop.oor.net (oor-04.cim3.net) - http://ontolog.cim3.net/forum/oor-users/2012-02/msg00000.html
 * need better means to deal with it ... (discuss)
 * also, since we are running multiple instances, we need some means to differentiate, e.g. support questions from the sandbox, socop, or dev instance. ... [action: ...]


 * planning and coordination on upcoming OOR events
 * re-scheduling metadata (VI?) session: with MikeBennett on financial metadata - some time in Mar-2012 (either Mar-13) - [MichaelGruninger]
 * re-scheduling Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: on "ISO/IEC 24707 Common Logic and IKL" [MichaelGruninger & JohnBateman] ... will discuss off-line and revert (as OntoIOp is also meeting every other week now)
 * OOR Architecture & API Workshop-XII now scheduled for (either Mar-20) - Ken & Todd
 * next Content workshop ...?
 * ... lining up more?
 * no meeting on Feb-14 & Feb-28
 * we meet on Feb-21 about coding
 * Mar-6 team meeting


 * doing something at OntologySummit2012
 * Todd will champion OOR by injecting it into any track where it makes sense ... also by way of NCOIC involvement
 * Mike will support (technically, especially by way of the socop-oor instance) Nancy and Gary in the collaborative SOCoP-INTEROP / Summit workshop that Nancy is spearheading
 * Ken will work on one presentation (on behalf of OOR), which Todd and Peter will try to slot into one of the sessions - possibility: "OOR and webservices"
 * ... think of something we can engage DuaneNickull on


 * Member activities updates - ref. below ... (item skipped; discussion deferred)


 * action planning for "content drive" ... (item skipped; discussion deferred) (getting people to upload ontologies)


 * Getting us to a stage when we can run a OOR-production box ... (item skipped; discussion deferred)

... Notes below are from previous meeting(s), and will be updated as this meeting progresses.


 * planning and coordination on upcoming OOR events
 * Getting us to a stage when we can run a OOR-production box ...(we will skip this stock agenda item at today's call.)


 * action planning for facilitating code contribution (organizing ourselves so various sub-teams can actually get to work on coding) ...(we will skip this stock agenda item at today's call.)


 * action planning for "soliciting" content (getting people to upload ontologies) ...(we will skip this stock agenda item at today's call.)


 * Getting us to a stage when members can contribute code ... how, ETA?
 * (discussion 2011.05.06):
 * an adopted Architecture & API is definitely crucial, but that's not all
 * All team members are encouraged to mull over how we can get to that state effectively
 * in particular ... how do we make this a "successful" community-driven, open source project!?
 * (discussion 2011.06.03)'' ...


 * code development on an Eclipse IDE for all?


 * Code repository - considering "git" or github?


 * Getting us to a stage when we can run a OOR-production box ... what's still needed, ETA?

Member activities updates:


 * Review: members and OOR-related activities (2012.02.07)
 * OOR-sandbox status
 * code repository status
 * NCBO
 * NEU
 * Raytheon-BBN
 * Bremen
 * UToronto
 * Ryerson
 * Mathet
 * SOCoP_INTEROP
 * DataONE
 * NeOn (KMi and STL)
 * ONKI
 * KBSI
 * MMI
 * Use Cases
 * Architecture
 * API
 * Gatekeeping
 * production OOR instance
 * SIO
 * Funding
 * ICOM / DERI

Action planning for "soliciting" content (getting people to upload ontologies)

5. Funding progress:

6. Any Other Business:

7. Action items:

8. Schedule Next Meeting & Adjourn:


 * Next Meetings:
 * no OOR meetings on Feb-14 & Feb-28
 * we meet on Feb-21 about coding, and check progress on getting implementing our first tabs
 * 2012_03_06 - next Regular OOR Team meeting - first Tuesday of the month - OOR/ConferenceCall_2012_03_06
 * next Metadata workshop (VI) on Tue 2012.03.13
 * next Architecture API workshop (XI) on Tue 2012.03.20


 * Call adjourned at: 9:39 am PST

-- notes taken by: PeterYim / 2012.02.07-11:45am PST All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.

Resources

 * homepage - OpenOntologyRepository - http://OpenOntologyRepository.org
 * OOR Charter - To promote the global use and sharing of ontologies by: 1. establishing a hosted registry-repository; 2. enabling and facilitating open, federated, collaborative ontology repositories; 3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories.
 * "Ontology Repository" Definition - "An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed"
 * Team mailing list:
 * OOR-Team discussion: [ oor-forum ]''' message archives - http://ontolog.cim3.net/forum/oor-forum/
 * OOR-Users discussion and support: [ oor-users ]''' message archives - http://ontolog.cim3.net/forum/oor-users/
 * Developers mailing list: [ oor-dev ] message archives - http://ontolog.cim3.net/forum/oor-dev/
 * proceedings of our previous meetings, panel discussions and workshops


 * the Joint OOR-OntologySummit2008 Panel Discussions:
 * 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: LeoObrst & FrankOlken; Panelists: BruceBargmeyer, MikeDean, MarkMusen, FarrukhNajmi & PeterYim - ConferenceCall_2008_02_28
 * 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: LeoObrst & FabianNeuhaus; Panelists: WilliamBug, EvanWallace, JohnLMcCarthy, KenBaclawski, PeterBenson & RexBrooks - ConferenceCall_2008_03_27
 * 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: LeoObrst & FabianNeuhaus; Panelists: DougLenat, DekeSmith, MarciaZeng, DeniseBedford, PatHayes, MalaMehrotra & RobRaskin - ConferenceCall_2008_04_03
 * 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: BarrySmith & MichaelGruninger; Panelists: MichaelGruninger, PeterHaase, NatashaNoy & ElisaKendall - ConferenceCall_2008_04_10
 * the OOR Development panel sessions:
 * 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: LeoObrst; Panelists: MikeDean, MarkMusen, LiDing, BruceBargmeyer & BillAndersen - ConferenceCall_2008_08_22
 * 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: ToddSchneider; Panelists: MarkMusen, NatashaNoy, MikeDean, PaulBuitelaar / AndreasHarth, MathieuDaquin, KenBaclawski, MichaelGruninger - ConferenceCall_2009_02_19
 * 2009_07_16 - Thursday: Joint Ontolog-OOR Panel Discussion: "Integrated tools for ontology development and management: A field guide to the Stanford technology" - Chair: MarkMusen - Panelists: TaniaTudorache, TimRedmond, NatashaNoy - ConferenceCall_2009_07_16
 * 2009_07_30 - Thursday: Joint Ontolog-OOR Panel Discussion: "BioPortal and related Ontology Repository Implementations and Development" (Take-3) - Chair: NatashaNoy - Panelists: CarlosRueda, PaulAlexander, JohnGraybeal, MikeDean, StephenGranite, AlexGarcia, KenBaclawski - ConferenceCall_2009_07_30
 * 2010_02_19 - Friday: OOR Panel Discussion: "Coordinating our Open Ontology Repository Software Development" - Chair: MikeDean - Panelists: JimChatigny, MichaelGruninger, KenBaclawski, NatashaNoy - OOR/ConferenceCall_2010_02_19
 * 2010_04_01 - Thursday: Joint OOR-Ontolog Panel Session: "OOR Use Cases - Take-3" - Chair: KenBaclawski & ToddSchneider - Panelists: ToddSchneider, MatthewHettinger, KenBaclawski and MaximoGurmendez - ConferenceCall_2010_04_01
 * 2010_09_10 - Friday: Joint SIO-OOR-Ontolog Panel Discussion: "Common Logic (CL) Support for OOR" - Chair: JohnSowa - Panelists: JohnBateman-TillMossakowski, MichaelGruninger, CameronRoss, AdamPease, PatHayes - ConferenceCall_2010_09_10
 * 2010_09_17 - Friday: OOR Panel Discussion - "Getting OOR Development Going - Take-IV" Workshop - Co-chairs: ToddSchneider & MichaelGruninger - Panelists: ToddSchneider, MikeDean, NatashaNoy, ImmanuelNormann, KenBaclawski, MichaelGruninger - OOR/ConferenceCall_2010_09_17


 * 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - OOR/ConferenceCall_2010_10_15
 * 2011_09_13 - Tuesday: Joint NCBO-OOR Team Meeting - "Kicking-off the Next Phase of Collaboration" - Co-chairs: RayFergerson & PeterYim - OOR/ConferenceCall_2011_09_13
 * 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: BioPortal & OOR Synergies" - Co-chairs: KenBaclawski & ToddSchneider - Discussant: RayFergerson - OOR/ConferenceCall_2011_11_29
 * 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: BioPortal & OOR Synergies" - Co-chairs: KenBaclawski & ToddSchneider - Discussant: RayFergerson - OOR/ConferenceCall_2011_11_29


 * 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: KenBaclawski & MichaelGruninger - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, EricChan - OOR/ConferenceCall_2010_11_19
 * 2011_03_04 - Friday: OOR "Architecture & API Specification Development Workshop-I" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_04
 * 2011_03_11 - Friday: OOR - "Architecture & API Specification Development Workshop-II" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_11
 * 2011_03_25 - Friday: OOR - "Architecture & API Specification Development Workshop-III" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_25
 * 2011_04_22 - Friday: OOR - "Architecture & API Specification Development Workshop-IV" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_04_22
 * 2011_05_20 - Friday: OOR - "Architecture & API Specification Development Workshop-V" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_05_20
 * 2011_06_17 - Friday: OOR - "Architecture & API Specification Development Workshop-VI" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_06_17
 * 2011_09_20 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VII" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_09_20
 * 2011_10_11 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VIII" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_10_11
 * 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: BioPortal & OOR Synergies" - Co-chairs: KenBaclawski & ToddSchneider - Discussant: RayFergerson - OOR/ConferenceCall_2011_11_29
 * 2012_01_31 - Tuesday: OOR Architecture & API Workshop-X - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2012_01_31
 * 2012_01_31 - Tuesday: OOR Architecture & API Workshop-X - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2012_01_31


 * 2011_11_08 - Tuesday: "Getting OOR Development Going - Take-V" Workshop - Chair: MikeDean - "Getting OOR Development going, on Eclipse?" - OOR/ConferenceCall_2011_11_08
 * 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: MikeDean - OOR/ConferenceCall_2011_11_22
 * 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: MikeDean - OOR/ConferenceCall_2011_11_22


 * 2011_03_18 - Friday: OOR Metadata Workshop-I - Chair: MichaelGruninger - OOR/ConferenceCall_2011_03_18
 * 2011_05_13 - Friday: OOR Metadata Workshop-II - Chair: MichaelGruninger - OOR/ConferenceCall_2011_05_13
 * 2011_05_27 - Friday: OOR Metadata Workshop-III - Chair: MichaelGruninger - OOR/ConferenceCall_2011_05_27
 * 2011_10_18 - Friday: OOR Metadata Workshop-IV - Chair: MichaelGruninger - OOR/ConferenceCall_2011_10_18
 * 2012_01_17 - Tuesday: OOR Metadata Workshop-V - "OOR Metadata Workshop-V: Crosswalk between OMV & CTS2, and other relevant work by the NIH/NCI-ORWG" Chair: MichaelGruninger - Panelists: HaroldSolbrig, SherriDeCoronado, BrianDavis - OOR/ConferenceCall_2012_01_17
 * 2012_01_17 - Tuesday: OOR Metadata Workshop-V - "OOR Metadata Workshop-V: Crosswalk between OMV & CTS2, and other relevant work by the NIH/NCI-ORWG" Chair: MichaelGruninger - Panelists: HaroldSolbrig, SherriDeCoronado, BrianDavis - OOR/ConferenceCall_2012_01_17


 * the OOR-IPR mini-series:
 * 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: GeorgeStrawn - Chair: PeterYim - Panelists: JamieClark, JohnWilbanks, BrucePerens - ConferenceCall_2010_09_09
 * 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: MarkMusen - Panelists: CameronRoss, AlanRector, JohnSowa, BrucePerens, JohnWilbanks, PeterYim - ConferenceCall_2010_09_16
 * 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: LeoObrst - Panelists: PeterYim, MikeDean, BrucePerens, JamieClark - ConferenceCall_2010_09_30


 * the Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series:
 * 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" Standardization Effort - Co-chairs: JohnBateman & MichaelGruninger - ConferenceCall_2011_10_20
 * 2011_11_03 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-2: Invited Speaker: ElisaKendall on "Ontology-Related Metadata Standards" - Co-chairs: MichaelGruninger & JohnBateman - ConferenceCall_2011_11_03
 * 2011_12_15 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: "ISO/IEC 24707 Common Logic and IKL" - Co-chairs: MichaelGruninger & JohnBateman - ConferenceCall_2011_12_15


 * OntologySummit2008 homepage
 * OntologySummit2008_Communique
 * OntologySummit2008/FaceToFaceAgenda & Proceedings
 * The OOR Project Presentation (delivered at the OntologySummit2008 face-to-face workshop)
 * [ ontology-summit ] discussion archives - http://ontolog.cim3.net/forum/ontology-summit/2008-01/ (~5 months exchanges starting from Jan-2008)
 * Our key content pages:
 * OpenOntologyRepository_Scope
 * OpenOntologyRepository_Organization
 * OpenOntologyRepository_Process
 * OpenOntologyRepository_Policy
 * OpenOntologyRepository_IPR
 * OpenOntologyRepository_Requirement
 * OpenOntologyRepository_UseCases
 * OpenOntologyRepository_Architecture
 * OpenOntologyRepository_Approach
 * OpenOntologyRepository_Roadmap
 * OpenOntologyRepository_Plan
 * OpenOntologyRepository_Funding
 * OpenOntologyRepository_ResearchIssues
 * OpenOntologyRepository_ResearchActivity
 * OpenOntologyRepository_Development
 * OpenOntologyRepository_Metadata
 * OOR/ActiveMemberContribution
 * OOR Project site at SemWebCentral - http://oor.semwebcentral.org
 * Public instances of OOR - http://sandbox.oor.net/ontologies (previously http://oor-01.cim3.net/ontologies) ... we are in process to standing up:
 * OOR_SandBox - http://oor-03.cim3.net (online now!) - ( http://sandbox.oor.net/ - later)
 * OOR_DevBox - http://oor-01.cim3.net - ( http://dev.oor.net/ - v2.6 - now obsolete)
 * OOR_DevBox - ( http://oor-05.cim3.net - ( http://dev.oor.net/ - coming!))
 * SOCoP_OOR - http://oor-04.cim3.net - http://socop.oor.net/ - (online now!)
 * NCBO - BioPortal
 * BioPortal's [bioontology-support] mailing list - see: https://mailman.stanford.edu/mailman/listinfo/bioontology-support
 * NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development