OOR/ConferenceCall 2012 04 24

= OpenOntologyRepository: Metadata Workshop-VII - Tue 2012_04_24 =

Topic: OOR Metadata Workshop-VII: Metadata in Ontology Mapping

Session Chair: Professor MichaelGruninger (University of Toronto)

Panelists:


 * Dr. OliverKutz / Dr. ChristophLange / Dr. TillMossakowski (University of Bremen, Germany) - "Ontology Links in the Distributed Ontology Language (DOL)" [ slides ]
 * Dr. JeromeEuzenat (INRIA & LIG, France) - "Ontology alignment metadata" ... [ slides ]
 * Dr. NatashaNoy (Stanford University, USA) - "Mapping repository in BioPortal" ... [ slides ]

Archives:


 * Abstract
 * Agenda & Proceedings
 * Prepared presentation material (slides) can be accessed by clicking on each of the title links below:
 * [ 0-Chair (no slides)  ] . [ 1-Kutz-Lange-Mossakowski ] . [ 2-Euzenat ] . [ 3-Noy ]
 * References
 * [ audio recording of the session] ... (coming!)
 * Transcript of the online chat session during the panel discussion ... (raw transcript is now online; cleaned-up version coming!)
 * Additional Resources

Conference Call Details:

 * Date: Tuesday, 24-April-2012
 * Start Time: 8:30am PDT / 11:30am EDT / 5:30pm CEST / 15:30 UTC
 * ref: World Clock
 * Expected Call Duration: 1.5~2.0 hours


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Attendees

 * Attended:
 * MichaelGruninger (chair)
 * JeromeEuzenat
 * PeterYim
 * KenBaclawski
 * TillMossakowski
 * OliverKutz
 * ChristophLange
 * NatashaNoy
 * MikeDean
 * ChristopherSpottiswoode
 * DaliaVaranka
 * TerryLongstreth
 * ToddSchneider
 * TaraAthan
 * JeffreyWallk
 * VictorAgroskin
 * AliHashemi
 * FrankOlken
 * MikeBennett
 * PavithraKenjige...
 * SeanMcBride


 * Expecting:
 * DanielMekonnen
 * ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail  so that we can reserve enough resources to support everyone's participation. ...
 * ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail  so that we can reserve enough resources to support everyone's participation. ...


 * Regrets:

Abstract
Topic: OOR Metadata Workshop-VII: Metadata in Ontology Mapping

by: MichaelGruninger

The OOR Metadata Workshop series is devoted to exploring existing and proposed approaches to the specification of metadata for ontologies, particularly in the context of ontology repositories.

The workshop today will focus on ontology metadata for ontology mappings.

References:

 * Proceedings of OOR Metadata Workshop-I and MichaelGruninger's opening slides from that session
 * Proceedings of OOR Metadata Workshop-II
 * Proceedings of OOR Metadata Workshop-III
 * Proceedings of OOR Metadata Workshop-IV
 * Proceedings of OOR Metadata Workshop-V
 * Proceedings of OOR Metadata Workshop-VI
 * Proceedings of OOR Metadata Workshop-VII (this session)
 * Metadata for Ontologies - from the [[OntologySummit2008_Communique]]
 * Metadata requirement - as stipulated in the OOR IPR Policy
 * Ontology Metadata Vocabulary - OMV
 * Brief Description of OMV (with diagram) - http://omv2.sourceforge.net/description.html
 * "OMV - Ontology Metadata Vocabulary for the SemanticWeb" - OMV v2.4.1 (final) (Mar-2009)
 * The Joint OpenOntologyRepository-OntologySummit2008 Panel Discussion Session - ConferenceCall_2008_04_10
 * Presentation by PeterHaase "The OMV Ontology Metadata Vocabulary" at that session
 * OpenOntologyRepository_Architecture
 * OpenOntologyRepository_UseCases - http://www.ccs.neu.edu/home/kenb/ontologies/

Agenda & Proceedings
Full proceedings will be made available in our archives after the session.

1. Meeting called to order - chair: MichaelGruninger

2. Introduction of the panel - chair: MichaelGruninger (~5 min.)

3. Presentation by the the panelists (~20 min. each) ... [ slides ]

DOL also supports the combination of ontologies via links (technically, these combinations are colimits). Tool support for DOL is provided by the Heterogeneous Tool Set (Hets). i.e., sets of correspondences between entities of two ontologies. Competing alignments may exists between the same pair of ontologies for many reasons such as completeness, correctness, or expressiveness. It is worth being able of identify such alignments. Metadata on alignments, and correspondences, are helpful to retrieve and to qualify them. Such metadata may be used for alignment characterisation, provenance, or quality. Metadata for alignments is not a stabilised area so it is preferable to offer an extensible annotation framework. I will report on how this is dealt with in the Alignment API and the Alignment server.
 * OliverKutz / ChristophLange / TillMossakowski - "Ontology Links in the Distributed Ontology Language (DOL)"
 * Abstract: The Distributed Ontology Language DOL, which is currently being standardised as ISO WD 17347 within the OntoIOp (Ontology Integration and Interoperability) activity of ISO/TC 37/SC 3, aims at providing a unified framework for
 * ontologies formalised in heterogeneous logics,
 * modular ontologies,
 * links between ontologies, and
 * annotation of ontologies.
 * A DOL ontology consists of modules formalised in basic ontology languages, such as OWL or Common Logic, which are serialised in the existing syntaxes of these languages. On top of this, DOL provides a meta-level which allows for expressing heterogeneous ontologies and links between ontologies. This talk focuses on the latter. Links include
 * logical links: (heterogeneous) imports and theory interpretations, as well as
 * alignments, which largely follow the syntax specified by the Alignment API.
 * alignments, which largely follow the syntax specified by the Alignment API.
 * JeromeEuzenat - "Ontology alignment metadata"
 * Abstract: It is very important to be able to publish and address ontology alignments,
 * Additional material:
 * J. Euzenat, P. Shvaiko, Ontology matching, Springer, 2007 - http://book.ontologymatching.org
 * Alignment API and server: http://alignapi.gforge.inria.fr
 * Alignment annotations: http://alignapi.gforge.inria.fr/labels.html


 * NatashaNoy - "Mapping repository in BioPortal"
 * Abstract: BioPortal, the open ontology repository developed by the National Center for Biomedical Ontology, contains more than 300 ontologies. These ontologies inevitably overlap in content. Thus, in addition to serving as an ontology repository, BioPortal also provides a repository of mappings between the terms in the ontologies. This repository contains the mappings that the BioPortal team generates automatically, the mappings created by the users interactively through the BioPortal user interface, and the mappings that our users have created elsewhere and contributed to BioPortal. The metadata for mappings describes the provenance of the mappings, enables users to comment on and discuss the mappings, and allows users to add extra information such as transformation scripts.

4. Q & A and Open discussion (~20 min.) ... (ref. process above)

6. Wrap-up: Announcements and Follow-up actions (where applicable) - chair: MichaelGruninger (~5 min.)

Transcript of the online chat during the session:
see raw transcript here.

(for better clarity, the version below is a [ re-organized and lightly edited chat-transcript].) Participants are welcome to make light edits to their own contributions as they see fit.

-- begin in-session chat-transcript --

-- end of in-session chat-transcript --

6.1 Any Other Business:

6.2 Action items:

6.3 Schedule Next Meeting & Adjourn:


 * Next Meeting:
 * regular monthly OOR team meeting next week - Tue 2012.05.01
 * then the "OOR Architecture & API Workshop-XII" on Tue 2012.05.08


 * Call adjourned at: 10:27 am PDT

-- notes taken by: PeterYim / 2012.04.24-12:11pm PDT All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.

Resources

 * Homepage for the Open Ontology Repository Initiative - OpenOntologyRepository - http://OpenOntologyRepository.org or simply http://www.oor.net
 * OOR Charter - To promote the global use and sharing of ontologies by:
 * 1. establishing a hosted registry-repository;
 * 2. enabling and facilitating open, federated, collaborative ontology repositories;
 * 3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories.
 * "Ontology Repository" Definition - "An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed"
 * Team mailling list:
 * OOR-Team discussion: [ oor-forum ]''' message archives - http://ontolog.cim3.net/forum/oor-forum/
 * OOR-Users discussion and support: [ oor-users ]''' message archives - http://ontolog.cim3.net/forum/oor-users/
 * Developers mailling list: [ oor-dev ] message archives - http://ontolog.cim3.net/forum/oor-dev/
 * proceedings of our previous meetings, panel discussions and workshops


 * the Joint OOR-OntologySummit2008 Panel Discussions:
 * 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: LeoObrst & FrankOlken; Panelists: BruceBargmeyer, MikeDean, MarkMusen, FarrukhNajmi & PeterYim - ConferenceCall_2008_02_28
 * 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: LeoObrst & FabianNeuhaus; Panelists: WilliamBug, EvanWallace, JohnLMcCarthy, KenBaclawski, PeterBenson & RexBrooks - ConferenceCall_2008_03_27
 * 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: LeoObrst & FabianNeuhaus; Panelists: DougLenat, DekeSmith, MarciaZeng, DeniseBedford, PatHayes, MalaMehrotra & RobRaskin - ConferenceCall_2008_04_03
 * 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: BarrySmith & MichaelGruninger; Panelists: MichaelGruninger, PeterHaase, NatashaNoy & ElisaKendall - ConferenceCall_2008_04_10


 * the OOR Development panel sessions:
 * 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: LeoObrst; Panelists: MikeDean, MarkMusen, LiDing, BruceBargmeyer & BillAndersen - ConferenceCall_2008_08_22
 * 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: ToddSchneider; Panelists: MarkMusen, NatashaNoy, MikeDean, PaulBuitelaar / AndreasHarth, MathieuDaquin, KenBaclawski, MichaelGruninger - ConferenceCall_2009_02_19
 * 2009_07_16 - Thursday: Joint Ontolog-OOR Panel Discussion: "Integrated tools for ontology development and management: A field guide to the Stanford technology" - Chair: MarkMusen - Panelists: TaniaTudorache, TimRedmond, NatashaNoy - ConferenceCall_2009_07_16
 * 2009_07_30 - Thursday: Joint Ontolog-OOR Panel Discussion: "BioPortal and related Ontology Repository Implementations and Development" (Take-3) - Chair: NatashaNoy - Panelists: CarlosRueda, PaulAlexander, JohnGraybeal, MikeDean, StephenGranite, AlexGarcia, KenBaclawski - ConferenceCall_2009_07_30
 * 2010_02_19 - Friday: OOR Panel Discussion: "Coordinating our Open Ontology Repository Software Development" - Chair: MikeDean - Panelists: JimChatigny, MichaelGruninger, KenBaclawski, NatashaNoy - OOR/ConferenceCall_2010_02_19
 * 2010_04_01 - Thursday: Joint OOR-Ontolog Panel Session: "OOR Use Cases - Take-3" - Chair: KenBaclawski & ToddSchneider - Panelists: ToddSchneider, MatthewHettinger, KenBaclawski and MaximoGurmendez - ConferenceCall_2010_04_01
 * 2010_09_10 - Friday: Joint SIO-OOR-Ontolog Panel Discussion: "Common Logic (CL) Support for OOR" - Chair: JohnSowa - Panelists: JohnBateman-TillMossakowski, MichaelGruninger, CameronRoss, AdamPease, PatHayes - ConferenceCall_2010_09_10
 * 2010_09_17 - Friday: OOR Panel Discussion - "Getting OOR Development Going - Take-IV" Workshop - Co-chairs: ToddSchneider & MichaelGruninger - Panelists: ToddSchneider, MikeDean, NatashaNoy, ImmanuelNormann, KenBaclawski, MichaelGruninger - OOR/ConferenceCall_2010_09_17


 * 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - OOR/ConferenceCall_2010_10_15
 * 2011_09_13 - Tuesday: Joint NCBO-OOR Team Meeting - "Kicking-off the Next Phase of Collaboration" - Co-chairs: RayFergerson & PeterYim - OOR/ConferenceCall_2011_09_13
 * 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: BioPortal & OOR Synergies" - Co-chairs: KenBaclawski & ToddSchneider - Discussant: RayFergerson - OOR/ConferenceCall_2011_11_29
 * 2012_03_27 - Tuesday: OOR presentation: "Ontohub: an OOR-compliant Repository for Distributed Ontologies" - Chair: TillMossakowski - OOR/ConferenceCall_2012_03_27
 * 2012_03_27 - Tuesday: OOR presentation: "Ontohub: an OOR-compliant Repository for Distributed Ontologies" - Chair: TillMossakowski - OOR/ConferenceCall_2012_03_27


 * 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: KenBaclawski & MichaelGruninger - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, EricChan - OOR/ConferenceCall_2010_11_19
 * 2011_03_04 - Friday: OOR "Architecture & API Specification Development Workshop-I" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_04
 * 2011_03_11 - Friday: OOR - "Architecture & API Specification Development Workshop-II" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_11
 * 2011_03_25 - Friday: OOR - "Architecture & API Specification Development Workshop-III" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_25
 * 2011_04_22 - Friday: OOR - "Architecture & API Specification Development Workshop-IV" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_04_22
 * 2011_05_20 - Friday: OOR - "Architecture & API Specification Development Workshop-V" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_05_20
 * 2011_06_17 - Friday: OOR - "Architecture & API Specification Development Workshop-VI" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_06_17
 * 2011_09_20 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VII" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_09_20
 * 2011_10_11 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VIII" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_10_11
 * 2012_01_31 - Tuesday: OOR - "Architecture & API Workshop-X" - Co-chairs: ToddSchneider & KenBaclawski - OOR/ConferenceCall_2012_01_31
 * 2012_03_20 - Tuesday: OOR - "Architecture & API Workshop-XI" - Co-chairs: ToddSchneider & KenBaclawski - OOR/ConferenceCall_2012_03_20
 * 2012_03_20 - Tuesday: OOR - "Architecture & API Workshop-XI" - Co-chairs: ToddSchneider & KenBaclawski - OOR/ConferenceCall_2012_03_20


 * 2011_11_08 - Tuesday: "Getting OOR Development Going - Take-V" Workshop - Chair: MikeDean - "Getting OOR Development going, on Eclipse?" - OOR/ConferenceCall_2011_11_08
 * 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: MikeDean - OOR/ConferenceCall_2011_11_22
 * 2012_02_28 - Tuesday: "Getting OOR Development Going - Take-VII" Workshop - Chair: KenBaclawski - OOR/ConferenceCall_2012_02_28
 * 2012_02_28 - Tuesday: "Getting OOR Development Going - Take-VII" Workshop - Chair: KenBaclawski - OOR/ConferenceCall_2012_02_28


 * 2011_03_18 - Friday: OOR Metadata Workshop-I - Chair: MichaelGruninger - OOR/ConferenceCall_2011_03_18
 * 2011_05_13 - Friday: OOR Metadata Workshop-II - Chair: MichaelGruninger - OOR/ConferenceCall_2011_05_13
 * 2011_05_27 - Friday: OOR Metadata Workshop-III - Chair: MichaelGruninger - OOR/ConferenceCall_2011_05_27
 * 2011_10_18 - Tuesday: OOR Metadata Workshop-IV - Chair: MichaelGruninger - OOR/ConferenceCall_2011_10_18
 * 2012_01_17 - Tuesday: OOR Metadata Workshop-V - Chair: MichaelGruninger - OOR/ConferenceCall_2012_01_17
 * 2012_03_06 - Tuesday: OOR Metadata Workshop-VI - Chair: MichaelGruninger - OOR/ConferenceCall_2012_03_06
 * 2012_04_24 - Tuesday: OOR Metadata Workshop-VII - Chair: MichaelGruninger - OOR/ConferenceCall_2012_04_24
 * 2012_04_24 - Tuesday: OOR Metadata Workshop-VII - Chair: MichaelGruninger - OOR/ConferenceCall_2012_04_24


 * 2011_12_13 - Tuesdayday: OOR Infrastructure Workshop - Chair: PeterYim - OOR/ConferenceCall_2011_12_13
 * 2011_12_13 - Tuesdayday: OOR Infrastructure Workshop - Chair: PeterYim - OOR/ConferenceCall_2011_12_13


 * the OOR-IPR mini-series:
 * 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: GeorgeStrawn - Chair: PeterYim - Panelists: JamieClark, JohnWilbanks, BrucePerens - ConferenceCall_2010_09_09
 * 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: MarkMusen - Panelists: CameronRoss, AlanRector, JohnSowa, BrucePerens, JohnWilbanks, PeterYim - ConferenceCall_2010_09_16
 * 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: LeoObrst - Panelists: PeterYim, MikeDean, BrucePerens, JamieClark - ConferenceCall_2010_09_30


 * the Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series:
 * 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" Standardization Effort - Co-chairs: JohnBateman & MichaelGruninger - ConferenceCall_2011_10_20
 * 2011_11_03 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-2: Invited Speaker: ElisaKendall on "Ontology-Related Metadata Standards" - Co-chairs: MichaelGruninger & JohnBateman - ConferenceCall_2011_11_03


 * OntologySummit2008 homepage
 * OntologySummit2008_Communique
 * OntologySummit2008/FaceToFaceAgenda & Proceedings
 * The OOR Project Presentation (delivered at the OntologySummit2008 face-to-face workshop)
 * [ ontology-summit ] discussion archives - http://ontolog.cim3.net/forum/ontology-summit/2008-01/ (~5 months exchanges starting from Jan-2008)
 * Our key content pages:
 * OpenOntologyRepository_Scope
 * OpenOntologyRepository_Organization
 * OpenOntologyRepository_Process
 * OpenOntologyRepository_Policy
 * OpenOntologyRepository_IPR
 * OpenOntologyRepository_Requirement
 * OpenOntologyRepository_UseCases
 * OpenOntologyRepository_Architecture
 * OpenOntologyRepository_Approach
 * OpenOntologyRepository_Roadmap
 * OpenOntologyRepository_Plan
 * OpenOntologyRepository_Funding
 * OpenOntologyRepository_ResearchIssues
 * OpenOntologyRepository_ResearchActivity
 * OpenOntologyRepository_Development
 * OpenOntologyRepository_Metadata
 * OOR/ActiveMemberContribution
 * OOR Project site at SemWebCentral - http://oor.semwebcentral.org
 * Public instances of OOR - http://oor.net
 * OOR_SandBox - http://oor-03.cim3.net - http://sandbox.oor.net/
 * see also: OOR_SandBox_Customization
 * OOR_DevBox - http://oor-05.cim3.net - http://dev.oor.net/
 * a first OOR Test instance - http://oor-06.cim3.net - http://test-00.oor.net/
 * SOCoP_OOR - http://oor-04.cim3.net - http://socop.oor.net/ontologies
 * COLORE_OOR - http://colore.oor.net
 * ORNL-DAAC - http://ornl-daac.oor.net
 * MMI-ORR - http://mmisw.oor.net
 * NCBO - BioPortal
 * BioPortal's [bioontology-support] mailing list - see: https://mailman.stanford.edu/mailman/listinfo/bioontology-support
 * NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development

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